Changes in version 0.8.1.9000                      

  - fixed bug in which fetch_table() errored out when fetching the Stock
    or Fishery tables.
  - fixed bug in which sensitivity_scaled() errored out when applied to
    tables with Comment column (like the "NonRetention" table).

                        Changes in version 0.8.1                        

  - fixed bug in which fetch_table() could cause row duplications if a
    database had more than 1 version (or species) of stock or fishery id
    unless labeling was turned off. This has been resolved.
    fetch_table() no longer labels tables when working with a transfer
    database, as in that case the mapping of labels to stock or fishery
    IDs are ambigious with overhaul of framrosetta (and possibly even
    then).

                        Changes in version 0.8.0                        

New Features

  - Tracks connections made with connect_fram_db() in .fram_connections,
    a new addition to the global environment. This allows identification
    of existing connections (including orphans) with
    list_extant_fram_connections() and disconnecting all existing
    connections (including orphans) with
    disconnect_all_fram_connections().
  - label_flags() inserts columns fishery_flag_label and
    non_retention_flag_label with human-readable versions of flag
    numbers if the corresponding flag column is present.
  - Re-export framrosetta::label_fisheries() and
    framrosetta::label_stocks() which add human-readable columns
    $fishery_label and $stock_label to dataframes if $fishery_id or
    $stock_id are present, based on LUT in framrosetta. Added
    label_stocks_db() and label_fisheries_db() to fulfil the same
    prupose but using the Stock or Fishery tables of a provided FRAM
    connection.
  - fetch_table() and aeq_mortality() now default to adding labels for
    fisheries, stocks, and flags. This can be turned off with label =
    FALSE. DEV NOTE: fetch_table()_ is a non-exported alias for
    fetch_table() with label = FALSE, ditto aeq_mortality_() for
    aeq_mortality().
  - add_total_mortality() inserts a total_mortalities column into a
    mortality database, which is the sum of the eight mortality columns.
    Also works on the output of aeq_mortality(). This is now used under
    the hood in several framrsquared functions like stock_fate_*().
  - For developers: non-exported function check_demo_coverage() takes
    path to a NAMESPACE file and a document file (like the
    framrsquared_test_and_demo.qmd file) and checks if each of the
    exported files from the package are present in the document. Useful
    for double-checking a complete tesitng file.

Bug fixes and minor improvements

  - Minor improvements to documentation, including addition of @seeAlso
    for most functions.
  - fetch_table() now gives a warning if it fetches a mortality table
    with negative mortalities.
  - remove_run() can now remove multiple runs.
  - change_run_id() no longer gives a warning when connecting tables
    after use.
  - More input validation. Also more / better validation functions to
    streamline this process. validate_flag() checks for a length 1
    logical; validate_character() checks for a length n character.
    validate_fishery_ids() confirms the fishery ids are present in the
    database.
  - Several validate_*() functions now have optional argument n -- if
    provided, validate that the input is of length n.
  - get_run_ids(),get_fishery_ids(), get_stock_ids() added to return
    vector of available runs, fisheries, stocks. Primarily used for
    internal validation functions.
  - added "See also" cross-referencing to many functions
  - Revised documentation for many functions to enhance readability.
  - improved pass-through of "species" attribute.
  - make_impacts_per_catch_heatmap() renamed to
    plot_impacts_per_catch_heatmap(). Still a mouthfull, but aligns with
    naming of other plot functions.
  - stock_comp() renamed to plot_stock_comp() for more consistent naming
    schemes.
  - terminal_info() updated with optional argument in anticipation of
    new table for stock splitting purposes. Default behavior is
    appropriate for the current table structure.
  - plot_stock_mortality now skips timestep 1 for Chinook, as that
    timestep happens before/during the NoF process.
  - style guide functions are now not exported. Still available for use
    by devs, although considering removal as they are surpassed by
    styling plugins.
  - make_batch_runs() exported. Primarily useful internally in
    sensitivity functions.

                        Changes in version 0.7.0                        

New features

  - modify_table() allows flexible modification of FRAM databases,
    calc_fram_scaling allows scaling of existing values of FRAM
    databases
  - sensitivity_scaled() and sensitivity_exact() allow easy creation of
    sensitivity analysis runs that are compatible with the multi-run
    fork of FRAM
  - sensitivity_custom() allows definition of complex scenarios to run
    for a sensitivity analysis, presumably using programmatic
    generation. For example, could be used to explore how changing age
    composition (without changing abundance) affects ERs.
  - Vignette on sensitivity analysis.

Bug fixes and minor improvements

  - Fix to post_season_abundance(): previously the function would
    misbehave if both chinook and coho stocks were defined in the
    "Stock" table. This is no longer the case.
  - Fix to mortality_scaler(): previously did not correctly account for
    terminal area fisheries, does now.
  - minor additional validation functions, including validate_table(),
    provide_table_name() and fetch_table_colnames().

                        Changes in version 0.6.0                        

New features

Bug fixes and minor improvements

                        Changes in version 0.5.0                        

New features

Bug fixes and minor improvements

...